coreEngine.Calibration.Organisms

Class ConstrainedCap1Org

java.lang.Object

coreEngine.Calibration.Organism

coreEngine.Calibration.Organisms.ConstrainedCap1Org

public class ConstrainedCap1Org
extends Organism

Author:

jltrask

Field Summary

Fields

Modifier and Type	Field and Description
protected java.lang.String[]	adjFactors
protected static java.lang.String	idString
protected java.lang.String[]	loc

Fields inherited from class coreEngine.Calibration.Organism

alg, capacityDropPct, fitness, FITNESS_TYPE, FITNESS_TYPE2, geometry, multiFitness, mutationPct, numProfiles, profileMapping, scenIdx, seedIdx

Constructor Summary

Constructors

Constructor and Description
ConstrainedCap1Org(GeneticAlgorithm alg, int numSeg)
ConstrainedCap1Org(GeneticAlgorithm alg, int seedIdx, int numSeg)

Method Summary

Modifier and Type	Method and Description
int	applyMeme()
void	assignAFToSeed(int locIdx, int per)
void	calcFitness()
protected void	calcMultiFitness()
protected void	calcSingleFitness()
Organism[]	crossover(Organism mate)
static void	exhaustiveSearch1Fix1Variable(Seed seed, AlgHelper algHelper, float minVal, float step, int range, int fixedLoc)
static void	exhaustiveSearchFixedLoc(Seed seed, AlgHelper algHelper, float minVal, float step, int range, int loc1)
static void	exhaustiveSearchFixedLoc(Seed seed, AlgHelper algHelper, float minVal, float step, int range, int loc1, int loc2)
static void	exhaustiveSearchFixedLoc(Seed seed, AlgHelper algHelper, float minVal, float step, int range, int loc1, int loc2, int loc3)
static int	exhaustiveSearchVariable1Loc(Seed seed, AlgHelper algHelper, float minVal, float step, int range)
static int	exhaustiveSearchVariable2Loc(Seed seed, AlgHelper algHelper, float minVal, float step, int range)
float	getAF(int locIdx)
java.lang.String	getBinAF(int locIdx)
java.lang.String	getBinLoc(int locIdx)
ConstrainedCap1Org	getChildOrg(java.lang.String[] newAfs, java.lang.String[] newLocArr)
Organism	getDeepCopy()
int	getDim1()
float[]	getEncodingArray(int per)
java.lang.String	getEncodingString()
int	getLoc(int locIdx)
void	mutate()
void	setAFs(java.lang.String[] afArr)
void	setBinAF(java.lang.String newAF, int locIdx)
void	setBinLoc(java.lang.String newLoc, int locIdx)
void	setLocArr(java.lang.String[] locArr)

Methods inherited from class coreEngine.Calibration.Organism

checkFitnessDiversity, getFitness, getScenarioIndex, getSeedBaseFitness, getSeedIdx, setGeometry, setScenarioIndex, setSeedIdx

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

idString

protected static final java.lang.String idString

See Also:

Constant Field Values

loc

protected final java.lang.String[] loc

adjFactors

protected final java.lang.String[] adjFactors

Constructor Detail

ConstrainedCap1Org

public ConstrainedCap1Org(GeneticAlgorithm alg,
                          int numSeg)

ConstrainedCap1Org

public ConstrainedCap1Org(GeneticAlgorithm alg,
                          int seedIdx,
                          int numSeg)

Method Detail

getDim1

public int getDim1()

getChildOrg

public ConstrainedCap1Org getChildOrg(java.lang.String[] newAfs,
                                      java.lang.String[] newLocArr)

setAFs

public void setAFs(java.lang.String[] afArr)

setLocArr

public void setLocArr(java.lang.String[] locArr)

getAF

public float getAF(int locIdx)

getLoc

public int getLoc(int locIdx)

setBinAF

public void setBinAF(java.lang.String newAF,
                     int locIdx)

getBinAF

public java.lang.String getBinAF(int locIdx)

setBinLoc

public void setBinLoc(java.lang.String newLoc,
                      int locIdx)

getBinLoc

public java.lang.String getBinLoc(int locIdx)

assignAFToSeed

public void assignAFToSeed(int locIdx,
                           int per)

Specified by:

assignAFToSeed in class Organism

calcFitness

public void calcFitness()

Specified by:

calcFitness in class Organism

calcSingleFitness

protected void calcSingleFitness()

calcMultiFitness

protected void calcMultiFitness()

crossover

public Organism[] crossover(Organism mate)

Specified by:

crossover in class Organism

Returns:

mutate

public void mutate()

Specified by:

mutate in class Organism

getDeepCopy

public Organism getDeepCopy()

Specified by:

getDeepCopy in class Organism

applyMeme

public int applyMeme()

Specified by:

applyMeme in class Organism

getEncodingArray

public float[] getEncodingArray(int per)

Specified by:

getEncodingArray in class Organism

getEncodingString

public java.lang.String getEncodingString()

Specified by:

getEncodingString in class Organism

exhaustiveSearchVariable1Loc

public static int exhaustiveSearchVariable1Loc(Seed seed,
                                               AlgHelper algHelper,
                                               float minVal,
                                               float step,
                                               int range)

exhaustiveSearchVariable2Loc

public static int exhaustiveSearchVariable2Loc(Seed seed,
                                               AlgHelper algHelper,
                                               float minVal,
                                               float step,
                                               int range)

exhaustiveSearchFixedLoc

public static void exhaustiveSearchFixedLoc(Seed seed,
                                            AlgHelper algHelper,
                                            float minVal,
                                            float step,
                                            int range,
                                            int loc1)

exhaustiveSearchFixedLoc

public static void exhaustiveSearchFixedLoc(Seed seed,
                                            AlgHelper algHelper,
                                            float minVal,
                                            float step,
                                            int range,
                                            int loc1,
                                            int loc2)

exhaustiveSearchFixedLoc

public static void exhaustiveSearchFixedLoc(Seed seed,
                                            AlgHelper algHelper,
                                            float minVal,
                                            float step,
                                            int range,
                                            int loc1,
                                            int loc2,
                                            int loc3)

exhaustiveSearch1Fix1Variable

public static void exhaustiveSearch1Fix1Variable(Seed seed,
                                                 AlgHelper algHelper,
                                                 float minVal,
                                                 float step,
                                                 int range,
                                                 int fixedLoc)