coreEngine.Calibration.Organisms

Class CAFBinOrg

java.lang.Object

coreEngine.Calibration.Organism

coreEngine.Calibration.Organisms.CAFBinOrg

Direct Known Subclasses:

CapacityOrg2

public class CAFBinOrg
extends Organism

Author:

jltrask

Field Summary

Fields

Modifier and Type	Field and Description
protected java.lang.String[]	adjFactors
protected static java.lang.String	idString

Fields inherited from class coreEngine.Calibration.Organism

alg, capacityDropPct, fitness, FITNESS_TYPE, FITNESS_TYPE2, geometry, multiFitness, mutationPct, numProfiles, profileMapping, scenIdx, seedIdx

Constructor Summary

Constructors

Constructor and Description
CAFBinOrg(GeneticAlgorithm alg, int numSeg)
CAFBinOrg(GeneticAlgorithm alg, int seedIdx, int numSeg)

Method Summary

Modifier and Type	Method and Description
int	applyMeme()
void	assignAFToSeed(int seg, int per)
void	calcFitness()
protected void	calcMultiFitness()
protected void	calcSingleFitness()
Organism[]	crossover(Organism mate)
float	getAF(int seg)
java.lang.String	getBinAF(int seg)
CAFBinOrg	getChildOrg(java.lang.String[] newAFArr)
Organism	getDeepCopy()
int	getDim1()
float[]	getEncodingArray(int per)
java.lang.String	getEncodingString()
void	mutate()
void	setAFs(java.lang.String[] afArr)
void	setBinAF(java.lang.String newAF, int seg)

Methods inherited from class coreEngine.Calibration.Organism

checkFitnessDiversity, getFitness, getScenarioIndex, getSeedBaseFitness, getSeedIdx, setGeometry, setScenarioIndex, setSeedIdx

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

idString

protected static final java.lang.String idString

See Also:

Constant Field Values

adjFactors

protected final java.lang.String[] adjFactors

Constructor Detail

CAFBinOrg

public CAFBinOrg(GeneticAlgorithm alg,
                 int numSeg)

CAFBinOrg

public CAFBinOrg(GeneticAlgorithm alg,
                 int seedIdx,
                 int numSeg)

Method Detail

getDim1

public int getDim1()

getChildOrg

public CAFBinOrg getChildOrg(java.lang.String[] newAFArr)

setAFs

public void setAFs(java.lang.String[] afArr)

getAF

public float getAF(int seg)

setBinAF

public void setBinAF(java.lang.String newAF,
                     int seg)

getBinAF

public java.lang.String getBinAF(int seg)

assignAFToSeed

public void assignAFToSeed(int seg,
                           int per)

Specified by:

assignAFToSeed in class Organism

calcFitness

public void calcFitness()

Specified by:

calcFitness in class Organism

calcSingleFitness

protected void calcSingleFitness()

calcMultiFitness

protected void calcMultiFitness()

crossover

public Organism[] crossover(Organism mate)

Specified by:

crossover in class Organism

Returns:

mutate

public void mutate()

Specified by:

mutate in class Organism

getDeepCopy

public Organism getDeepCopy()

Specified by:

getDeepCopy in class Organism

applyMeme

public int applyMeme()

Specified by:

applyMeme in class Organism

getEncodingArray

public float[] getEncodingArray(int per)

Specified by:

getEncodingArray in class Organism

getEncodingString

public java.lang.String getEncodingString()

Specified by:

getEncodingString in class Organism