Bin3SkewDist

java.lang.Object
- coreEngine.Calibration.Distributions.Distribution
- - coreEngine.Calibration.Distributions.Bin3SkewDist

Direct Known Subclasses:: Bin3SkewNDist

public class Bin3SkewDist
extends Distribution

Author:: jlake

Field Summary

Fields
Modifier and Type	Field and Description
`java.lang.String`	`alpha1`
`private static double`	`ALPHA1_MAX`
`private static double`	`ALPHA1_MIN`
`private static double`	`ALPHA1_STEP`
`java.lang.String`	`alpha2`
`private static double`	`ALPHA2_MAX`
`private static double`	`ALPHA2_MIN`
`private static double`	`ALPHA2_STEP`
`java.lang.String`	`alpha3`
`private static double`	`ALPHA3_MAX`
`private static double`	`ALPHA3_MIN`
`private static double`	`ALPHA3_STEP`
`private static float`	`CROSSOVER_PCT`
`java.lang.String`	`d1Type`
`java.lang.String`	`d2Type`
`java.lang.String`	`d3Type`
`private static float`	`DEFAULT_MUTATE_PCT`
`private static int`	`MAX_BINARY_VALUE`
`java.lang.String`	`mu1`
`private static double`	`MU1_MAX`
`private static double`	`MU1_MIN`
`private static double`	`MU1_STEP`
`java.lang.String`	`mu2`
`private static double`	`MU2_MAX`
`private static double`	`MU2_MIN`
`private static double`	`MU2_STEP`
`java.lang.String`	`mu3`
`private static double`	`MU3_MAX`
`private static double`	`MU3_MIN`
`private static double`	`MU3_STEP`
`protected RealDistribution`	`nDist1`
`protected RealDistribution`	`nDist2`
`protected RealDistribution`	`nDist3`
`private static int`	`NUM_BIN_DIGIT`
`java.lang.String`	`sigma1`
`private static double`	`SIGMA1_MAX`
`private static double`	`SIGMA1_MIN`
`private static double`	`SIGMA1_STEP`
`java.lang.String`	`sigma2`
`private static double`	`SIGMA2_MAX`
`private static double`	`SIGMA2_MIN`
`private static double`	`SIGMA2_STEP`
`java.lang.String`	`sigma3`
`private static double`	`SIGMA3_MAX`
`private static double`	`SIGMA3_MIN`
`private static double`	`SIGMA3_STEP`
`java.lang.String`	`skew1`
`private static double`	`SKEW1_MAX`
`private static double`	`SKEW1_MIN`
`private static double`	`SKEW1_STEP`
`java.lang.String`	`skew2`
`private static double`	`SKEW2_MAX`
`private static double`	`SKEW2_MIN`
`private static double`	`SKEW2_STEP`
`java.lang.String`	`skew3`
`private static double`	`SKEW3_MAX`
`private static double`	`SKEW3_MIN`
`private static double`	`SKEW3_STEP`

Constructor Summary

Constructors
Constructor and Description
`Bin3SkewDist()`
`Bin3SkewDist(java.lang.String genes)`
`Bin3SkewDist(java.lang.String alpha1, java.lang.String alpha2, java.lang.String alpha3, java.lang.String d1Type, java.lang.String mu1, java.lang.String sigma1, java.lang.String skew1, java.lang.String d2Type, java.lang.String mu2, java.lang.String sigma2, java.lang.String skew2, java.lang.String d3Type, java.lang.String mu3, java.lang.String sigma3, java.lang.String skew3)`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`private static java.lang.String`	`binStringMutate(java.lang.String binString, float mutPct)`
`Distribution`	`clone()`
`Distribution[]`	`crossover(Distribution mate)`
`static double`	`getALPHA1_MAX()`
`static double`	`getALPHA1_MIN()`
`double`	`getAlpha1()`
`static double`	`getALPHA2_MAX()`
`static double`	`getALPHA2_MIN()`
`double`	`getAlpha2()`
`static double`	`getALPHA3_MAX()`
`static double`	`getALPHA3_MIN()`
`double`	`getAlpha3()`
`java.lang.String`	`getConcatBinEncoding()`
`static float`	`getCROSSOVER_PCT()`
`static double`	`getMU1_MAX()`
`static double`	`getMU1_MIN()`
`double`	`getMu1()`
`static double`	`getMU2_MAX()`
`static double`	`getMU2_MIN()`
`double`	`getMu2()`
`static double`	`getMU3_MAX()`
`static double`	`getMU3_MIN()`
`double`	`getMu3()`
`static double`	`getSIGMA1_MAX()`
`static double`	`getSIGMA1_MIN()`
`double`	`getSigma1()`
`static double`	`getSIGMA2_MAX()`
`static double`	`getSIGMA2_MIN()`
`double`	`getSigma2()`
`static double`	`getSIGMA3_MAX()`
`static double`	`getSIGMA3_MIN()`
`double`	`getSigma3()`
`static double`	`getSKEW1_MAX()`
`static double`	`getSKEW1_MIN()`
`double`	`getSkew1()`
`static double`	`getSKEW2_MAX()`
`static double`	`getSKEW2_MIN()`
`double`	`getSkew2()`
`static double`	`getSKEW3_MAX()`
`static double`	`getSKEW3_MIN()`
`double`	`getSkew3()`
`float`	`getValue(double period)`
`float`	`getValue(float period)`
`float`	`getValue(int period)`
`void`	`mutate()`
`void`	`mutate(float mutRate)`
`void`	`mutate(int paramIdx)`
`static void`	`setALPHA1_MAX(double ALPHA1_MAX)`
`static void`	`setALPHA1_MIN(double ALPHA1_MIN)`
`void`	`setAlpha1(double newAlpha)`
`static void`	`setALPHA2_MAX(double ALPHA2_MAX)`
`static void`	`setALPHA2_MIN(double ALPHA2_MIN)`
`void`	`setAlpha2(double newAlpha)`
`static void`	`setALPHA3_MAX(double ALPHA3_MAX)`
`static void`	`setALPHA3_MIN(double ALPHA3_MIN)`
`void`	`setAlpha3(double newAlpha)`
`static void`	`setBinaryDigits(int numBinDigits)`
`static void`	`setCROSSOVER_PCT(float CROSSOVER_PCT)`
`static void`	`setMU1_MAX(double MU1_MAX)`
`static void`	`setMU1_MIN(double MU1_MIN)`
`void`	`setMu1(double newMu1)`
`static void`	`setMU2_MAX(double MU2_MAX)`
`static void`	`setMU2_MIN(double MU2_MIN)`
`void`	`setMu2(double newMu2)`
`static void`	`setMU3_MAX(double MU3_MAX)`
`static void`	`setMU3_MIN(double MU3_MIN)`
`void`	`setMu3(double newMu2)`
`static void`	`setSIGMA1_MAX(double SIGMA1_MAX)`
`static void`	`setSIGMA1_MIN(double SIGMA1_MIN)`
`void`	`setSigma1(double newSigma1)`
`static void`	`setSIGMA2_MAX(double SIGMA2_MAX)`
`static void`	`setSIGMA2_MIN(double SIGMA2_MIN)`
`void`	`setSigma2(double newSigma2)`
`static void`	`setSIGMA3_MAX(double SIGMA3_MAX)`
`static void`	`setSIGMA3_MIN(double SIGMA3_MIN)`
`void`	`setSigma3(double newSigma2)`
`static void`	`setSKEW1_MAX(double SKEW1_MAX)`
`static void`	`setSKEW1_MIN(double SKEW1_MIN)`
`static void`	`setSKEW2_MAX(double SKEW2_MAX)`
`static void`	`setSKEW2_MIN(double SKEW2_MIN)`
`static void`	`setSKEW3_MAX(double SKEW3_MAX)`
`static void`	`setSKEW3_MIN(double SKEW3_MIN)`
`java.lang.String`	`toString()`
`private static void`	`updateStaticParams()`

Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

alpha1
```
public java.lang.String alpha1
```

alpha2
```
public java.lang.String alpha2
```

alpha3
```
public java.lang.String alpha3
```

d1Type
```
public java.lang.String d1Type
```

mu1
```
public java.lang.String mu1
```

sigma1
```
public java.lang.String sigma1
```

d2Type
```
public java.lang.String d2Type
```

mu2
```
public java.lang.String mu2
```

sigma2
```
public java.lang.String sigma2
```

d3Type
```
public java.lang.String d3Type
```

mu3
```
public java.lang.String mu3
```

sigma3
```
public java.lang.String sigma3
```

skew1
```
public java.lang.String skew1
```

skew2
```
public java.lang.String skew2
```

skew3
```
public java.lang.String skew3
```

nDist1
```
protected RealDistribution nDist1
```

nDist2
```
protected RealDistribution nDist2
```

nDist3
```
protected RealDistribution nDist3
```

DEFAULT_MUTATE_PCT
```
private static final float DEFAULT_MUTATE_PCT
```
See Also:

Constant Field Values

CROSSOVER_PCT
```
private static float CROSSOVER_PCT
```

NUM_BIN_DIGIT
```
private static int NUM_BIN_DIGIT
```

MAX_BINARY_VALUE
```
private static int MAX_BINARY_VALUE
```

ALPHA1_MIN
```
private static double ALPHA1_MIN
```

ALPHA1_MAX
```
private static double ALPHA1_MAX
```

ALPHA1_STEP
```
private static double ALPHA1_STEP
```

ALPHA2_MIN
```
private static double ALPHA2_MIN
```

ALPHA2_MAX
```
private static double ALPHA2_MAX
```

ALPHA2_STEP
```
private static double ALPHA2_STEP
```

ALPHA3_MIN
```
private static double ALPHA3_MIN
```

ALPHA3_MAX
```
private static double ALPHA3_MAX
```

ALPHA3_STEP
```
private static double ALPHA3_STEP
```

MU1_MIN
```
private static double MU1_MIN
```

MU1_MAX
```
private static double MU1_MAX
```

MU1_STEP
```
private static double MU1_STEP
```

SIGMA1_MIN
```
private static double SIGMA1_MIN
```

SIGMA1_MAX
```
private static double SIGMA1_MAX
```

SIGMA1_STEP
```
private static double SIGMA1_STEP
```

MU2_MIN
```
private static double MU2_MIN
```

MU2_MAX
```
private static double MU2_MAX
```

MU2_STEP
```
private static double MU2_STEP
```

SIGMA2_MIN
```
private static double SIGMA2_MIN
```

SIGMA2_MAX
```
private static double SIGMA2_MAX
```

SIGMA2_STEP
```
private static double SIGMA2_STEP
```

MU3_MIN
```
private static double MU3_MIN
```

MU3_MAX
```
private static double MU3_MAX
```

MU3_STEP
```
private static double MU3_STEP
```

SIGMA3_MIN
```
private static double SIGMA3_MIN
```

SIGMA3_MAX
```
private static double SIGMA3_MAX
```

SIGMA3_STEP
```
private static double SIGMA3_STEP
```

SKEW1_MIN
```
private static double SKEW1_MIN
```

SKEW1_MAX
```
private static double SKEW1_MAX
```

SKEW1_STEP
```
private static double SKEW1_STEP
```

SKEW2_MIN
```
private static double SKEW2_MIN
```

SKEW2_MAX
```
private static double SKEW2_MAX
```

SKEW2_STEP
```
private static double SKEW2_STEP
```

SKEW3_MIN
```
private static double SKEW3_MIN
```

SKEW3_MAX
```
private static double SKEW3_MAX
```

SKEW3_STEP
```
private static double SKEW3_STEP
```

Constructor Detail

Bin3SkewDist
```
public Bin3SkewDist()
```

Bin3SkewDist

public Bin3SkewDist(java.lang.String alpha1,
                    java.lang.String alpha2,
                    java.lang.String alpha3,
                    java.lang.String d1Type,
                    java.lang.String mu1,
                    java.lang.String sigma1,
                    java.lang.String skew1,
                    java.lang.String d2Type,
                    java.lang.String mu2,
                    java.lang.String sigma2,
                    java.lang.String skew2,
                    java.lang.String d3Type,
                    java.lang.String mu3,
                    java.lang.String sigma3,
                    java.lang.String skew3)

Bin3SkewDist

public Bin3SkewDist(java.lang.String genes)

Method Detail

getConcatBinEncoding

public java.lang.String getConcatBinEncoding()

getValue
```
public float getValue(int period)
```
Specified by:

getValue in class Distribution

getValue
```
public float getValue(float period)
```
Specified by:

getValue in class Distribution

getValue
```
public float getValue(double period)
```
Specified by:

getValue in class Distribution

clone
```
public Distribution clone()
```
Specified by:

clone in class Distribution

mutate
```
public void mutate()
```
Specified by:

mutate in class Distribution

mutate
```
public void mutate(float mutRate)
```
Specified by:

mutate in class Distribution

mutate
```
public void mutate(int paramIdx)
```
Specified by:

mutate in class Distribution

crossover

public Distribution[] crossover(Distribution mate)

Specified by:: crossover in class Distribution

toString
```
public java.lang.String toString()
```
Overrides:

toString in class java.lang.Object

getAlpha1
```
public double getAlpha1()
```

setAlpha1

public void setAlpha1(double newAlpha)

getAlpha2
```
public double getAlpha2()
```

setAlpha2

public void setAlpha2(double newAlpha)

getAlpha3
```
public double getAlpha3()
```

setAlpha3

public void setAlpha3(double newAlpha)

getMu1
```
public double getMu1()
```

setMu1
```
public void setMu1(double newMu1)
```

getSigma1
```
public double getSigma1()
```

setSigma1

public void setSigma1(double newSigma1)

getMu2
```
public double getMu2()
```

setMu2
```
public void setMu2(double newMu2)
```

getSigma2
```
public double getSigma2()
```

setSigma2

public void setSigma2(double newSigma2)

getMu3
```
public double getMu3()
```

setMu3
```
public void setMu3(double newMu2)
```

getSigma3
```
public double getSigma3()
```

setSigma3

public void setSigma3(double newSigma2)

getSkew1
```
public double getSkew1()
```

getSkew2
```
public double getSkew2()
```

getSkew3
```
public double getSkew3()
```

binStringMutate

private static java.lang.String binStringMutate(java.lang.String binString,
                                                float mutPct)

setBinaryDigits

public static void setBinaryDigits(int numBinDigits)

updateStaticParams

private static void updateStaticParams()

getALPHA1_MIN
```
public static double getALPHA1_MIN()
```

setALPHA1_MIN

public static void setALPHA1_MIN(double ALPHA1_MIN)

getALPHA1_MAX
```
public static double getALPHA1_MAX()
```

setALPHA1_MAX

public static void setALPHA1_MAX(double ALPHA1_MAX)

getALPHA2_MIN
```
public static double getALPHA2_MIN()
```

setALPHA2_MIN

public static void setALPHA2_MIN(double ALPHA2_MIN)

getALPHA2_MAX
```
public static double getALPHA2_MAX()
```

setALPHA2_MAX

public static void setALPHA2_MAX(double ALPHA2_MAX)

getALPHA3_MIN
```
public static double getALPHA3_MIN()
```

setALPHA3_MIN

public static void setALPHA3_MIN(double ALPHA3_MIN)

getALPHA3_MAX
```
public static double getALPHA3_MAX()
```

setALPHA3_MAX

public static void setALPHA3_MAX(double ALPHA3_MAX)

getMU1_MIN
```
public static double getMU1_MIN()
```

setMU1_MIN

public static void setMU1_MIN(double MU1_MIN)

getMU1_MAX
```
public static double getMU1_MAX()
```

setMU1_MAX

public static void setMU1_MAX(double MU1_MAX)

getSIGMA1_MIN
```
public static double getSIGMA1_MIN()
```

setSIGMA1_MIN

public static void setSIGMA1_MIN(double SIGMA1_MIN)

getSIGMA1_MAX
```
public static double getSIGMA1_MAX()
```

setSIGMA1_MAX

public static void setSIGMA1_MAX(double SIGMA1_MAX)

getMU2_MIN
```
public static double getMU2_MIN()
```

setMU2_MIN

public static void setMU2_MIN(double MU2_MIN)

getMU2_MAX
```
public static double getMU2_MAX()
```

setMU2_MAX

public static void setMU2_MAX(double MU2_MAX)

getSIGMA2_MIN
```
public static double getSIGMA2_MIN()
```

setSIGMA2_MIN

public static void setSIGMA2_MIN(double SIGMA2_MIN)

getSIGMA2_MAX
```
public static double getSIGMA2_MAX()
```

setSIGMA2_MAX

public static void setSIGMA2_MAX(double SIGMA2_MAX)

getMU3_MIN
```
public static double getMU3_MIN()
```

setMU3_MIN

public static void setMU3_MIN(double MU3_MIN)

getMU3_MAX
```
public static double getMU3_MAX()
```

setMU3_MAX

public static void setMU3_MAX(double MU3_MAX)

getSIGMA3_MIN
```
public static double getSIGMA3_MIN()
```

setSIGMA3_MIN

public static void setSIGMA3_MIN(double SIGMA3_MIN)

getSIGMA3_MAX
```
public static double getSIGMA3_MAX()
```

setSIGMA3_MAX

public static void setSIGMA3_MAX(double SIGMA3_MAX)

getSKEW1_MIN
```
public static double getSKEW1_MIN()
```

setSKEW1_MIN

public static void setSKEW1_MIN(double SKEW1_MIN)

getSKEW1_MAX
```
public static double getSKEW1_MAX()
```

setSKEW1_MAX

public static void setSKEW1_MAX(double SKEW1_MAX)

getSKEW2_MIN
```
public static double getSKEW2_MIN()
```

setSKEW2_MIN

public static void setSKEW2_MIN(double SKEW2_MIN)

getSKEW2_MAX
```
public static double getSKEW2_MAX()
```

setSKEW2_MAX

public static void setSKEW2_MAX(double SKEW2_MAX)

getSKEW3_MIN
```
public static double getSKEW3_MIN()
```

setSKEW3_MIN

public static void setSKEW3_MIN(double SKEW3_MIN)

getSKEW3_MAX
```
public static double getSKEW3_MAX()
```

setSKEW3_MAX

public static void setSKEW3_MAX(double SKEW3_MAX)

getCROSSOVER_PCT

public static float getCROSSOVER_PCT()

setCROSSOVER_PCT

public static void setCROSSOVER_PCT(float CROSSOVER_PCT)

Class Bin3SkewDist

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

alpha1

alpha2

alpha3

d1Type

mu1

sigma1

d2Type

mu2

sigma2

d3Type

mu3

sigma3

skew1

skew2

skew3

nDist1

nDist2

nDist3

DEFAULT_MUTATE_PCT

CROSSOVER_PCT

NUM_BIN_DIGIT

MAX_BINARY_VALUE

ALPHA1_MIN

ALPHA1_MAX

ALPHA1_STEP

ALPHA2_MIN

ALPHA2_MAX

ALPHA2_STEP

ALPHA3_MIN

ALPHA3_MAX

ALPHA3_STEP

MU1_MIN

MU1_MAX

MU1_STEP

SIGMA1_MIN

SIGMA1_MAX

SIGMA1_STEP

MU2_MIN

MU2_MAX

MU2_STEP

SIGMA2_MIN

SIGMA2_MAX

SIGMA2_STEP

MU3_MIN

MU3_MAX

MU3_STEP

SIGMA3_MIN

SIGMA3_MAX

SIGMA3_STEP

SKEW1_MIN

SKEW1_MAX

SKEW1_STEP

SKEW2_MIN

SKEW2_MAX

SKEW2_STEP

SKEW3_MIN

SKEW3_MAX

SKEW3_STEP

Constructor Detail

Bin3SkewDist

Bin3SkewDist

Bin3SkewDist

Method Detail

getConcatBinEncoding

getValue

getValue

getValue

clone

mutate

mutate

mutate

crossover

toString

getAlpha1