coreEngine.Calibration.Distributions

Class Bin3Dist

java.lang.Object

coreEngine.Calibration.Distributions.Distribution

coreEngine.Calibration.Distributions.Bin3Dist

Direct Known Subclasses:

Bin3NDist

public class Bin3Dist
extends Distribution

Author:

jlake

Field Summary

Fields

Modifier and Type	Field and Description
java.lang.String	alpha1
static double	ALPHA1_MAX
static double	ALPHA1_MIN
static double	ALPHA1_STEP
java.lang.String	alpha2
static double	ALPHA2_MAX
static double	ALPHA2_MIN
static double	ALPHA2_STEP
java.lang.String	alpha3
static double	ALPHA3_MAX
static double	ALPHA3_MIN
static double	ALPHA3_STEP
private static float	CROSSOVER_PCT
java.lang.String	d1Type
java.lang.String	d2Type
java.lang.String	d3Type
private static float	DEFAULT_MUTATE_PCT
private static int	MAX_BINARY_VALUE
java.lang.String	mu1
static double	MU1_MAX
static double	MU1_MIN
static double	MU1_STEP
java.lang.String	mu2
static double	MU2_MAX
static double	MU2_MIN
static double	MU2_STEP
java.lang.String	mu3
static double	MU3_MAX
static double	MU3_MIN
static double	MU3_STEP
protected RealDistribution	nDist1
protected RealDistribution	nDist2
protected RealDistribution	nDist3
private static int	NUM_BIN_DIGIT
java.lang.String	sigma1
static double	SIGMA1_MAX
static double	SIGMA1_MIN
static double	SIGMA1_STEP
java.lang.String	sigma2
static double	SIGMA2_MAX
static double	SIGMA2_MIN
static double	SIGMA2_STEP
java.lang.String	sigma3
static double	SIGMA3_MAX
static double	SIGMA3_MIN
static double	SIGMA3_STEP

Constructor Summary

Constructors

Constructor and Description
Bin3Dist()
Bin3Dist(java.lang.String genes)
Bin3Dist(java.lang.String alpha1, java.lang.String alpha2, java.lang.String alpha3, java.lang.String d1Type, java.lang.String mu1, java.lang.String sigma1, java.lang.String d2Type, java.lang.String mu2, java.lang.String sigma2, java.lang.String d3Type, java.lang.String mu3, java.lang.String sigma3)

Method Summary

Modifier and Type	Method and Description
private static java.lang.String	binStringMutate(java.lang.String binString, float mutPct)
Distribution	clone()
Distribution[]	crossover(Distribution mate)
double	getAlpha1()
double	getAlpha2()
double	getAlpha3()
java.lang.String	getConcatBinEncoding()
double	getMu1()
double	getMu2()
double	getMu3()
double	getSigma1()
double	getSigma2()
double	getSigma3()
float	getValue(double period)
float	getValue(float period)
float	getValue(int period)
void	mutate()
void	mutate(float mutRate)
void	mutate(int paramIdx)
void	setAlpha1(double newAlpha)
void	setAlpha2(double newAlpha)
void	setAlpha3(double newAlpha)
static void	setBinaryDigits(int numBinDigits)
void	setMu1(double newMu1)
void	setMu2(double newMu2)
void	setMu3(double newMu2)
void	setSigma1(double newSigma1)
void	setSigma2(double newSigma2)
void	setSigma3(double newSigma2)
java.lang.String	toString()

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

alpha1

public java.lang.String alpha1

alpha2

public java.lang.String alpha2

alpha3

public java.lang.String alpha3

d1Type

public java.lang.String d1Type

mu1

public java.lang.String mu1

sigma1

public java.lang.String sigma1

d2Type

public java.lang.String d2Type

mu2

public java.lang.String mu2

sigma2

public java.lang.String sigma2

d3Type

public java.lang.String d3Type

mu3

public java.lang.String mu3

sigma3

public java.lang.String sigma3

nDist1

protected RealDistribution nDist1

nDist2

protected RealDistribution nDist2

nDist3

protected RealDistribution nDist3

DEFAULT_MUTATE_PCT

private static final float DEFAULT_MUTATE_PCT

See Also:

Constant Field Values

CROSSOVER_PCT

private static final float CROSSOVER_PCT

See Also:

Constant Field Values

NUM_BIN_DIGIT

private static int NUM_BIN_DIGIT

MAX_BINARY_VALUE

private static int MAX_BINARY_VALUE

ALPHA1_MIN

public static final double ALPHA1_MIN

See Also:

Constant Field Values

ALPHA1_MAX

public static final double ALPHA1_MAX

See Also:

Constant Field Values

ALPHA1_STEP

public static double ALPHA1_STEP

ALPHA2_MIN

public static final double ALPHA2_MIN

See Also:

Constant Field Values

ALPHA2_MAX

public static final double ALPHA2_MAX

See Also:

Constant Field Values

ALPHA2_STEP

public static double ALPHA2_STEP

ALPHA3_MIN

public static final double ALPHA3_MIN

See Also:

Constant Field Values

ALPHA3_MAX

public static final double ALPHA3_MAX

See Also:

Constant Field Values

ALPHA3_STEP

public static double ALPHA3_STEP

MU1_MIN

public static final double MU1_MIN

See Also:

Constant Field Values

MU1_MAX

public static final double MU1_MAX

See Also:

Constant Field Values

MU1_STEP

public static double MU1_STEP

SIGMA1_MIN

public static final double SIGMA1_MIN

See Also:

Constant Field Values

SIGMA1_MAX

public static final double SIGMA1_MAX

See Also:

Constant Field Values

SIGMA1_STEP

public static double SIGMA1_STEP

MU2_MIN

public static final double MU2_MIN

See Also:

Constant Field Values

MU2_MAX

public static final double MU2_MAX

See Also:

Constant Field Values

MU2_STEP

public static double MU2_STEP

SIGMA2_MIN

public static final double SIGMA2_MIN

See Also:

Constant Field Values

SIGMA2_MAX

public static final double SIGMA2_MAX

See Also:

Constant Field Values

SIGMA2_STEP

public static double SIGMA2_STEP

MU3_MIN

public static final double MU3_MIN

See Also:

Constant Field Values

MU3_MAX

public static final double MU3_MAX

See Also:

Constant Field Values

MU3_STEP

public static double MU3_STEP

SIGMA3_MIN

public static final double SIGMA3_MIN

See Also:

Constant Field Values

SIGMA3_MAX

public static final double SIGMA3_MAX

See Also:

Constant Field Values

SIGMA3_STEP

public static double SIGMA3_STEP

Constructor Detail

Bin3Dist

public Bin3Dist()

Bin3Dist

public Bin3Dist(java.lang.String alpha1,
                java.lang.String alpha2,
                java.lang.String alpha3,
                java.lang.String d1Type,
                java.lang.String mu1,
                java.lang.String sigma1,
                java.lang.String d2Type,
                java.lang.String mu2,
                java.lang.String sigma2,
                java.lang.String d3Type,
                java.lang.String mu3,
                java.lang.String sigma3)

Bin3Dist

public Bin3Dist(java.lang.String genes)

Method Detail

getValue

public float getValue(int period)

Specified by:

getValue in class Distribution

getValue

public float getValue(float period)

Specified by:

getValue in class Distribution

getValue

public float getValue(double period)

Specified by:

getValue in class Distribution

clone

public Distribution clone()

Specified by:

clone in class Distribution

mutate

public void mutate()

Specified by:

mutate in class Distribution

mutate

public void mutate(float mutRate)

Specified by:

mutate in class Distribution

mutate

public void mutate(int paramIdx)

Specified by:

mutate in class Distribution

crossover

public Distribution[] crossover(Distribution mate)

Specified by:

crossover in class Distribution

getConcatBinEncoding

public java.lang.String getConcatBinEncoding()

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

getAlpha1

public double getAlpha1()

setAlpha1

public void setAlpha1(double newAlpha)

getAlpha2

public double getAlpha2()

setAlpha2

public void setAlpha2(double newAlpha)

getAlpha3

public double getAlpha3()

setAlpha3

public void setAlpha3(double newAlpha)

getMu1

public double getMu1()

setMu1

public void setMu1(double newMu1)

getSigma1

public double getSigma1()

setSigma1

public void setSigma1(double newSigma1)

getMu2

public double getMu2()

setMu2

public void setMu2(double newMu2)

getSigma2

public double getSigma2()

setSigma2

public void setSigma2(double newSigma2)

getMu3

public double getMu3()

setMu3

public void setMu3(double newMu2)

getSigma3

public double getSigma3()

setSigma3

public void setSigma3(double newSigma2)

binStringMutate

private static java.lang.String binStringMutate(java.lang.String binString,
                                                float mutPct)

setBinaryDigits

public static void setBinaryDigits(int numBinDigits)